Publications
Peterson, J.T., and P.B. Bayley. 1993. Colonization rates of fishes in experimentally defaunated warmwater streams. Transactions of the American Fisheries Society 122:199-207.
Peterson, J.T., and C.F. Rabeni. 1995. Optimizing sampling effort for sampling warmwater stream fish communities. North American Journal of Fisheries Management 15:528-541.
Peterson, J.T., and C.F. Rabeni. 1996. Natural thermal refugia for temperate warmwater stream fishes. North American Journal of Fisheries Management 16:738-746.
Peterson, J.T. and T.J. Kwak. 1999. Modeling the effects of land use and climate change on riverine smallmouth bass. Ecological Applications 9:1391-1404.
Peterson J.T. and C.F. Rabeni. 2001. Evaluating the efficiency of a one-square-meter quadrat sampler for riffle-dwelling fish. North American Journal of Fisheries Management 21:76-85.
Bayley, P.B. and J.T. Peterson. 2001. Species presence for zero observations: an approach and an application to estimate probability of occurrence of fish species and species richness. Transactions of the American Fisheries Society 130:620-633.
Rieman, B.E., J.T. Peterson, J. Clayton, P. Howell, R.F. Thurow, W. Thompson, and D.C. Lee. 2001. Evaluation of the potential effects of federal land management alternatives on the trends of salmonids and their habitats in the Interior Columbia River Basin. Journal of Forest Ecology and Management. Journal of Forest Ecology and Management 153:43-62.
Peterson, J.T. and C. F. Rabeni. 2001. The relation of fish assemblages to channel units in an Ozark stream Transactions of the American Fisheries Society 130:911-92.
Peterson, J.T. and C.F. Rabeni. 2001. Evaluating the physical characteristics of channel units in an Ozark stream. Transactions of the American Fisheries Society 130:898-910.
Dunham, J.B., B. E. Rieman, and J.T. Peterson. 2002. Patch-based models of species occurrence: lessons from salmonid fishes in streams. Pages 327-334 in J.M. Scott and P. J. Heglund, editors. Predicting Species Occurrences: Issues of Accuracy and Scale. Island Press, Covelo, California.
Peterson, J.T., J. Dunham, P. Howell, S. Bonar, R. Thurow. 2002. Protocol for determining bull trout presence. Western Division of the American Fisheries Society. American Fisheries Society, Bethesda, Maryland. (This is a peer-refereed special publication of the Western Division of the American Fisheries Society).
Weigel, D.E., J.T. Peterson, and P. Spruell. 2002. A probabilistic model to detect introgression between westslope cutthroat trout and rainbow trout based on phenotypic characteristics. Transactions of the American Fisheries Society 131:389-403.
Peterson, J.T. and J.W. Evans. 2003. Decision analysis for sport fisheries management. Fisheries 28(1):10-20.
Weigel, D.E., J.T. Peterson, and P. Spruell. 2003. The distribution of introgressive hybridization between westslope cutthroat trout and rainbow trout in the Clearwater Basin, Idaho. Ecological Applications 13:38-50.
Peterson, J.T. and J. Dunham. 2003. Combining inferences from models of capture efficiency, detectability, and suitable habitat to classify landscapes for conservation of threatened bull trout. Conservation Biology 17:1070-1077.
Conroy, M.J., C. Allen, J.T. Peterson, L. Pritchard, Jr., and C.T. Moore. 2003. Landscape change in the southern Piedmont: challenges, solutions, and uncertainty across scales. Conservation Ecology 8(2): 3. [online] URL: http://www.consecol.org/vol8/iss2/art3.
Peterson, J. T., R.F. Thurow, and J. Guzevich. 2004 An evaluation of multi-pass electrofishing for estimating the abundance of stream-dwelling salmonids. Transactions of the American Fisheries Society 133:462-475.
Walsh, M.G., J.T. Peterson, and T.J. Kwak. 2004. Influence of Long-Term Streamflow Variation on Recruitment of Riverine Fish Populations. Pages 21-25 in J.R. Copeland, F. Fiss, P.E. Balkenbush, and C.S. Thomason, editors. Warmwater streams symposium II. American Fisheries Society, Bethesda, Maryland.
Peterson, J.T. and P.B. Bayley. 2004. A Bayesian Approach to Estimating Presence When a Species is Undetected. Pages 173- 188 in W. L. Thompson, editor. Sampling Rare or Elusive Species: Concepts, Designs and Techniques for Estimating Population Parameters. Island Press, Covelo, California.
Peterson, J.T., N.P. Banish, and R.F. Thurow. 2005. Are blocknets necessary- Movements of stream-dwelling salmonids in response to three common survey methods. North American Journal of Fish Management 25:732-743.
Reiman, B.E., J.T. Peterson, and D.L. Myers. 2006. Have Brook Trout Displaced Bull Trout in Streams of Central Idaho?: An Empirical Analysis of Distributions Along Elevation and Thermal Gradients Canadian Journal of Fisheries and Aquatic Sciences 63:63-78.
Peterson, D.L., J.T. Peterson, and R.F. Carline. 2006. Effects of zooplankton density on survival of stocked walleye fry in five Pennsylvania reservoirs. Journal of Freshwater Ecology 21:121-129.
Thurow, R.F., J.T. Peterson, and J. W. Guzevich. 2006. Utility and validation of day and night snorkel counts for estimating bull trout abundance in 1st to 3rd order streams North American Journal of Fish Management 26:217-232.
Grossman, G.D., R.E. Ratajczak, J.T. Petty, M.D. Hunter, J.T. Peterson, and G. Grenouillet. 2006. Population dynamics of mottled sculpin (Pices:Cottidae) in a variable environment: an information theoretic approach. Ecological Monographs 76:217-234.
Peterson, J.T. and R.S. Mordecai. 2006. Review of Occupancy estimation and modeling. The Auk 123:1201-1202.
Albanese, B.R., J.T. Peterson, B.J. Freeman, and D. Wieler. 2007. Accounting for Incomplete Detection when Estimating Site Occupancy of Pteronotropis welaka (Bluenose Shiner) in Southwest Georgia. Southeastern Naturalist 6(4):669-682.
Peterson, J.T., C. Moore, S. Wenger, K. Kennedy, E. Irwin, and M. Freeman. 2007. Adaptive Management Applied To Aquatic Natural Resources. Chapter 6.4 in Proceedings of the 2007 Georgia Water Resources Conference, Athens.
Shea, C.P. and J.T. Peterson. 2007. An evaluation of the relative influence of habitat complexity and habitat stability on fish assemblage structure in unregulated and regulated reaches of a large southeastern warmwater stream. Transactions of the American Fisheries Society 136:943-958.
Kwak, T.J. and J.T. Peterson. 2007. Community Indices, Parameters, and Comparisons. Pages 667-763 in M. Brown and C. Guy, editors. Analysis and interpretation of Freshwater Fisheries Data. American Fisheries Society, Bethesda, Maryland.
Ruiz, J. and J.T. Peterson. 2007. An Evaluation of the Relative Influence of Spatial, Statistical, and Biological Factors on the Accuracy of Stream Fish Species Presence Models. Transactions of the American Fisheries Society 136:1640-1653.
Howell, J.A., J.T. Peterson, and M.J. Conroy. 2008. Building Hierarchical Models of Avian Distributions for the State of Georgia. Journal of Wildlife Management 72:168-
Banish, N.P., J.T. Peterson, R.F. Thurow. 2008. Physical, Biotic, and Sampling Influences on Diel Habitat Use by Stream-Dwelling Bull Trout. North American Journal of Fisheries Management 28:176-187.
Runge, J.R., J.T. Peterson, C. R. Martin. 2008. Survival and dispersal of hatchery-raised rainbow trout (Onchorynchus mykiss) in a river basin undergoing urbanization. North American Journal of Fisheries Management 28:745-757.
Reinert, T.R. and J.T. Peterson. 2008. Modeling the Effects of Potential Salinity Shifts on the Recovery of Striped Bass in the Savannah River Estuary, Georgia-South Carolina, US. Environmental Management 41:753-765.
Wenger, S.J., J.T. Peterson, M.C. Freeman, B.J. Freeman, and D.D. Homans. 2008. Stream fish occurrence in response to impervious cover, historic land use and hydrogeomorphic factors. Canadian Journal of Fisheries and Aquatic Sciences 65:1250-1264.
Sitompul, A.F., J.P. Carroll, J. Peterson, and S. Hedges. 2008. Modelling Impacts of Poaching on the Sumatran Elephant Population in Way Kambas National Park, Sumatra, Indonesia. Gajah 28:31-40.
Conroy, M.J., J. T. Peterson, O. L. Bass, C. J. Fonnesbeck, J. E. Howell, C. T. Moore, and J. P. Runge. 2008. Sources of Variation in Detection from Aerial Surveys of Wading Birds in the Florida Everglades. Auk 125:731-743.
Konwick, B. J., G. T. Tomy, N. Ismail, J. T. Peterson, R. J. Fauver, D. Higginbotham, M. Blount|, and A. T. Fisk. 2008. Concentrations and patterns of perfluorinated compounds in Georgia (USA) surface waters near and distant to a major use source. Environmental Toxicology and Chemistry 27:2011-2018.
Conroy, M.J. and J.T. Peterson. in press. Integrating Management, Research, and Monitoring: Leveling the 3-Legged Stool. Proceedings of Gamebird 2006, Athens, Georgia.
Peterson, J.T. and C. Paukert. in press. Data conversion. Chapter 12 in S. Bonar, D. Willis and W. Hubert, editors. Standard Sampling Methods for North American Freshwater Fishes.
Rabeni, C.F., J.T. Peterson, J. Lyons., and N. Mercado-Silva. in press. Warmwater Fish in Wadeable Streams. Chapter 4 in S. Bonar, D. Willis and W. Hubert, editors. Standard Sampling Methods for North American Freshwater Fishes.
Dennard, S., J.T. Peterson, and E.S. Hawthorne. accepted The Life History and Ecology of Cambarus halli, an Endemic Crayfish of the Tallapoosa River Basin, Georgia. Southeastern Naturalist.
Mattsson, B. J., R S. Mordecai, M. J. Conroy, J. T. Peterson, Robert J. Cooper, and H. Christensen. accepted. When does N0 matter? A stochastic population viability analysis for imperiled large-bodied woodpeckers, with implications for the recently rediscovered Ivory-billed woodpecker. Avian Conservation and Ecology.
Works in progress
Albanese, B., P.L. Angermeier, and J.T. Peterson. Does mobility limit rates of colonization and population recovery among stream fishes? Journal of Fish Biology.
Grabowski, T. B., T. D. Ferguson, J. T. Peterson, and C. A. Jennings. Capture probability and behavioral response of robust redhorse, a cryptic riverine fish, to electrofishing. North American Journal of Fisheries Management.
Irwin, E. R., K. D. M. Kennedy, M. C. Freeman, and J. Peterson. Adaptive Management of a Regulated River: A Template for Stakeholder Involvement and Structured Decision Making. Ecology and Society.
McCargo, J.W and J.T. Peterson An evaluation of the Influence of Flow Depletion on Warmwater Stream Fish Assemblages. Transactions of the American Fisheries Society.
Meador, J.M. and J.T. Peterson. An Evaluation of the Factors Influencing Freshwater Mussel Sampling and Demographics in a Large Lowland River. Journal of the North American Benthological Society.
Peterson, J.T. Influence of incomplete capture on the estimation of stream fish biotic integrity and species richness: problems and solutions. Transactions of the American Fisheries Society.
Peterson, J.T., C.R. Jackson, C.P. Shea, and G. Li. The development and evaluation of a stream channel classification for estimating the response of fishes to changing streamflow. Transactions of the American Fisheries Society.
Wisniewski, J.M. and J.T. Peterson. Relationship of physiography, landscape, and drought to species richness and presence of imperiled unionids in the Lower Flint River Basin of Georgia. Journal of the North American Benthological Society.